Bokhari SH, Rutt B, Wyckoff P, Buerger P. Experimental analysis of a mass storage system. Concurrency and Computation: Practice and Experience. 2006;18:1929-1950.
Boyer KL, Gotardo PFU, Saltz J, Raman SV. On the detection of intra-ventricular dyssynchrony in the left ventricle from routine cardiac MRI. 3rd IEEE International Symposium on Biomedical Imaging: Macro to Nano, 2006 Apr 6-9;169-172. Digital Object Identifier 10.1109/ISBI.2006.1624879
Bozdag D, Catalyurek UV, Ozguner F. A task duplication based bottom-up scheduling algorithm for heterogeneous environments. Proceedings of 20th International Parallel and Distributed Processing Symposium (IPDPS). 2006 Digital Object Identifier 10.1109/IPDPS.2006.1639389
Buehrer G, Ghoting A, Zhang X, Tatikonda S, Parthasarathy S, Kurc T, Saltz J. I/O conscious algorithm design and systems support for data analysis on emerging architectures. 20th International Parallel and Distributed Processing Symposium, IPDPS 2006 Apr 25-29;8.
Digital Object Identifier 10.1109/IPDPS.2006.1639586
Chen J, Yuan B. Detecting functional modules in the yeast protein-protein interaction network. Bioinformatics 2006 Sep 15:22(18):2283-2290.
Cooper L, Huang K, Sharma A, Mosaliganti K, Pan T. Registration VS reconstruction: building 3-d models from 2-d microscopy images. Proceedings of Workshop on Multiscale Biological Imaging, Data Mining and Informatics 2006:57-58.
Devine KD, Boman EG, Heaphy R, Bisseling R, Catalyurek UV. Parallel hypergraph partitioning for scientific computing. Proceedings of 20th International Parallel and Distributed Processing Symposium (IPDPS). 2006. Digital Object Identifier 10.1109/IPDPS.2006.1639359
Gershenzon N, Trifonov EN, Ioschikhes I. The features of drosophila core promoters revealed by statistical analysis. BMC Genomics 2006;7:161-174.
Gotardo PFU, Boyer KL, Saltz J, Raman SV. A new deformable model for boundary tracking in cardiac MRI and its application to the detection of intra-ventricular dyssynchrony 2006 IEEE Computer Society Conference on Computer Vision and Pattern Recognition. 2006 June 17-22;(1):736-743. Digital Object Identifier 10.1109/CVPR.2006.34
Gurcan MN, Ernst R, Oto A, Worrell S, Hoffmeister JW, Rogers SK. Measurement of colonic polyp size from virtual colonoscopic studies: comparison of manual and automated methods. Proceedings of SPIE Medical Imaging 2006;6144-61445B.
Gurcan MN, Pan T Shimada H, Saltz J. Image analysis for neuroblastoma classification: segmentation of cell nuclei. 28th Annual Conference of the IEEE Engineering in Medicine and Biology Society 2006 Aug;4844-4847.Digital Object Identifier 10.1109/IEMBS.2006.260837
Hong W, Wright J, Huang K, Ma Y. A multi-scale hybrid linear model for lossy image representation. IEEE Transaction on Image Processing 2006 Dec;15(12):3655-3671.
Ioshikhes IP, Albert I, Zanton SJ, Pugh BF. Nucleosome positions predicted through comparative genomics. Nature Genetics 2006 Oct;38(10):1210-1215.
Khanna G, Catalyurek UV, Kurc TM, Sadayappan P, Saltz JH. A data locality aware online scheduling approach for I/O-intensive jobs with file sharing. Proceedings of the 12th International Workshop on Job Scheduling Strategies for Parallel Processing (JSSPP 2006). Lecture Notes on Computer Science. 2006
Khanna G, Vydyanathan N, Catalyurek UV, Kurc TM, Krishnamoorthy S, Sadayappan P, Saltz J. Task scheduling and file replication for data-intensive jobs with batch-shared I/O. Proceedings of the 15th IEEE International Symposium on High-Performance Distributed Computing (HPDC-15). 2006:241-252.
Krishnamoorthy S, Catalyurek UV, Nieplocha J, Rountev A, Sadayappan P. Hypergraph partitioning for automatic memory hierarchy management. Proceedings of the 2006 ACM/IEEE conference on Supercomputing (SC2006). 2006;34. Digital Object Identifier 10.1109/SC.2006.36
Krishnamoorthy S, Catalyurek UV, Nieplocha J, Sadayappan P. An approach to locality-conscious load balancing and transparent memory hierarchy management with a global-address-space parallel programming model. Proceedings of 20th International Parallel and Distributed Processing Symposium (IPDPS). 2006. Digital Object Identifier 10.1109/IPDPS.2006.1639719
Krishnamoorthy S, Catalyurek UV, Nieplocha J, Rountev A, Sadayappan P. An extensible global address space framework with decoupled task and data abstractions. Proceedings of 20th International Parallel and Distributed Processing Symposium (IPDPS). 2006. Digital Object Identifier 10.1109/IPDPS.2006.1639577
Kumar VS, Rutt B, Kurc TM, Catalyurek UV, Chow S, Lamont S, Martone M, Saltz J. Large image correction and warping in a cluster environment. Proceedings of the 2006 ACM/IEEE conference on Supercomputing (SC2006). 2006 Nov;38. Digital Object Identifier 10.1109/SC.2006.39
Kurc TM, Janies DA, Johnson A, Langella S, Oster S, Hastings SL, Habib F, Camerlengo T, Ervin DW, Catalyurek UV, Saltz J. An XML-based system for synthesis of data from disparate databases. Journal of the American Medical Informatics Association 2006;13:289-301.
Langella S, Oster S, Hastings SL, Siebenlist F, Kurc TM, Saltz JH. Dorian: grid service infrastructure for identity management and federation. The 19th IEEE Symposium on Computer-Based Medical Systems 2006:756-761. Digital Object Identifier 10.1109/CBMS.2006.80
Mosaliganti K, Gulacy A, Machiraju R, Huang K, Leone G, Saltz JH. Registration and 3D visualization of large microscopy images. Proceedings of the SPIE Annual Medical Imaging Meetings. 2006.
Mosaliganti K, Jia G, Heverhagen J, Machiraju R, Saltz J, Knopp M. Preventing signal degradation during elastic matching of noisy DCE-MRI eye images. Lecture Notes in Computer Science, Springer-Verlag. 2006;4190:832-839.
Mosaliganti K, Pan T, Sharp R, Ridgway R, Iyengar S, Gulacy A, Wenzel P, deBruin A, Machiraju R, Huang K, Leone G, Saltz JH. Registration and 3D visualization of large microscopy images. Proceedings of the SPIE Annual Medical Imaging Meetings 2006; 6144:923-934.
Mosaliganti KR, Jonos F, Xu X, Machiraju R, Wong STC, Huang K. Temporal matching of dendritic spines in confocal microscopy images of neuronal tissue. Proceedings of 1st Workshop on Microscopic Image Analysis with Applications in Biology (MIAAB). Metaxas DN, Whitaker RT, Rittscher J, Sebastian TB, eds., 2006;106-113
Narayanan S, Kurc TM, Catalyurek UV, Saltz JH. On creating efficient object-relational views of scientific datasets. Proceedings of the 2006 International Conference on Parallel Processing (ICPP-06). 2006:551-558. Digital Object Identifier 10.1109/ICPP.2006.56
Prescott J, Clary M, Wiet GJ, Pan T, Huang K. Automatic registration of large set of microscopic images using high-level features. Proceedings of the IEEE International Symposium on Medical Imaging. 2006:1284-1287.
Ridgway R, Irfanoglu O, Machiraju R, Huang K. Image segmentation with tensor-based classification of n-point correlation functions. Proceedings of 1st Workshop on Microscopic Image Analysis with Applications in Biology (MIAAB). Metaxas DN, Whitaker RT, Rittscher J, Sebastian TB, eds., 2006. 93-98.
Rutt B, Catalyurek UV, Hakobyan A, Metzroth K, Aldemir T, Denning R, Dunagan S, Kunsman D. Distributed dynamic event tree generation for reliability and risk assessment. Proceedings of the International Workshop on Challenges of Large Applications in Distributed Environments (CLADE'06) 2006;61-70.
Saltz JH, Oster S, Hastings SL, Langella S, Sanchez W, Kher M, Covitz P. CaGrid: design and implementation of the core architecture of the cancer biomedical informatics grid. Bioinformatics 2006;22:1910-1916.
Sharp R, Ridgway, Mosaliganti K, Irfanoglu O, Wenzel P, Machiraju R, de Bruin A., Leone G, Pan T, Huang K, Saltz, J. Examining Phenotype Differences in Mouse Placenta with Volume Rendering and Segmentation. Life Science Systems and Applications Workshop, 2006. IEEE/NLM July 2006 Page(s):1 - 2 Digital Object Identifier 10.1109/LSSA.2006.250431
Teodoro G, Tavares T, Ferreira R, Kurc T, Meira Jr W, Guedes D, Pan T, Saltz J. A Run-time System for Efficient Execution of Scientific Workflows on Distributed Environments. Computer Architecture and High Performance Computing, 2006. SBAC-PAD '06. 18TH International Symposium on Computer Architecture and High Performance Computing Oct. 2006 Page(s):81 - 90 Digital Object Identifier 10.1109/SBAC-PAD.2006.6
Ucar D, Asur S, Catalyurek UV, Parthasarathy S. Improving functional modularity in protein-protein interactions graphs using hub-induced subgraphs. Proceedings of the European Conference on Principles and Practice of Knowledge Discovery in Databases (PKDD). Lecture Notes in Computer Science, Springer-Verlag. 2006;4213:371-382.
Vydyanathan N, Khanna G, Catalyurek UV, Kurc TM, Saltz JH, Sadayappan P. Scheduling of tasks with batch-shared I/O on heterogeneous systems. Proceedings of 20th International Parallel and Distributed Processing Symposium (IPDPS). 2006.
Vydyanathan N, Krishnamoorthy S, Sabin G, Catalyurek UV, Kurc TM, Sadayappan P, Saltz J. Locality conscious processor allocation and scheduling for mixed parallel applications. Proceedings of 2006 IEEE International Conference on Cluster Computing. 2006.
Vydyanathan N, Krishnamoorthy S, Sabin G, Catalyurek UV, Kurc TM, Sadayappan P, Saltz J. An integrated approach for processor allocation and scheduling of mixed-parallel applications. Proceedings of the 2006 International Conference on Parallel Processing (ICPP-06). 2006:443-450. Digital Object Identifier 10.1109/ICPP.2006.22
Weng L, Catalyurek UV, Kurc TM, Agrawal G, Saltz JH. Using space and attribute partitioned partial replicas for data subsetting and aggregation queries. Proceedings of the 2006 International Conference on Parallel Processing (ICPP-06). 2006:271-280. Digital Object Identifier 10.1109/ICPP.2006.73
Wheeler, WC, Aagesen, L, Arango, CP, Faivovich, J, Grant, T, D'Haese, C, Janies, D, Smith, WL, Varon, A, Giribet, G. Dynamic homology and phylogenetic systematics: a unified approach using POY. American Museum of Natural History, New York. ISBN 0-913424-58-7.
Zhang X, Hasoksuz M, Spiro D, Halpin R, Wang S, Stollar S, Janies DA, Hadya N, Tang Y, Ghedin E, Saif LJ. Complete genomic sequences, a key residue in the spike protein and deletions in nonstructural protein 3b of US strains of the virulent and attenuated coronaviruses, transmissible gastroenteritis virus and porcine respiratory coronavirus. Virology 2006. E-publication prior to journal article.
Zhang X, Kurc TM, Saltz JH. Design and analysis of a multi-dimensional data sampling service for large scale data analysis applications. 20th IEEE International Parallel & Distributed Processing Symposium (IPDPS). 2006. Digital Object Identifier 10.1109/IPDPS.2006.1639315
Zhang X, Rutt B, Catalyurek UV, Kurc TM, Stoffa PL, Sen M, Saltz J. Supporting scalable and distributed data subsetting and aggregation in large-scale seismic data analysis. The International Journal of High Performance Computing Applications. 2006;20:423-438.